Uses of Class
starfish.chemistry.Molecule

Packages that use Molecule

starfish.chemistry
starfish.chemistry.io

Uses of Molecule in starfish.chemistry

Fields in starfish.chemistry declared as Molecule

Molecule

Entity.molecule

Methods in starfish.chemistry that return Molecule

static Molecule

Molecule.get(java.lang.String name)

Methods in starfish.chemistry with parameters of type Molecule

static int	Molecule.buildTree(tcl.lang.Interp interp, Molecule molecule, Atom startAtom, java.util.Vector atomList, MTree mTree)
static void	Molecule.getAtomTypes(Molecule molecule)
static Atom	Molecule.getStartAtom(Molecule molecule)
static java.util.Vector	Molecule.matchAtoms(MolFilter molFilter, Molecule molecule)
void	Molecule.reName(Molecule molecule, Compound compound, java.lang.String name1, java.lang.String name2)
MatchCriteria[]	IdPeakCmd.setup(tcl.lang.Interp interp, Molecule molecule, tcl.lang.TclObject[] argv)

Constructors in starfish.chemistry with parameters of type Molecule

Molecule.SpatialSetIterator(Molecule molecule)

Uses of Molecule in starfish.chemistry.io

Methods in starfish.chemistry.io with parameters of type Molecule

void	PDB.readSDResidue(tcl.lang.Interp interp, java.lang.String fileName, java.lang.String fileContent, Molecule molecule, java.lang.String coordSetName)
static void	CoordinateSTARWriter.writeToSTAR3(tcl.lang.Interp interp, java.lang.String chanName, Molecule molecule, int setNum)