starfish.chemistry
Class NoeCmd

java.lang.Object
  starfish.chemistry.NoeCmd

All Implemented Interfaces:

tcl.lang.Command

public class NoeCmd
extends java.lang.Object
implements tcl.lang.Command

Constructor Summary

NoeCmd()

Method Summary

void	cmdProc(tcl.lang.Interp interp, tcl.lang.TclObject[] argv)
void	cmdProc2(tcl.lang.Interp interp, tcl.lang.TclObject[] argv)
static void	extractNoePeaks(tcl.lang.Interp interp, starfish.datasets.peaks.PeakList peakList, int mode)
static void	extractNoePeaks2(tcl.lang.Interp interp, starfish.datasets.peaks.PeakList peakList, int maxAmbig, boolean getInfo)
static void	extractNoePeaksSlow(tcl.lang.Interp interp, starfish.datasets.peaks.PeakList peakList, int mode)
static Atom[][]	getAtoms(tcl.lang.Interp interp, starfish.datasets.peaks.Peak peak)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NoeCmd

public NoeCmd()

Method Detail

cmdProc

public void cmdProc(tcl.lang.Interp interp,
                    tcl.lang.TclObject[] argv)
             throws tcl.lang.TclException

Specified by:

cmdProc in interface tcl.lang.Command

Throws:

tcl.lang.TclException

cmdProc2

public void cmdProc2(tcl.lang.Interp interp,
                     tcl.lang.TclObject[] argv)
              throws tcl.lang.TclException

Throws:

tcl.lang.TclException

getAtoms

public static Atom[][] getAtoms(tcl.lang.Interp interp,
                                starfish.datasets.peaks.Peak peak)
                         throws tcl.lang.TclException

Throws:

tcl.lang.TclException

extractNoePeaks

public static void extractNoePeaks(tcl.lang.Interp interp,
                                   starfish.datasets.peaks.PeakList peakList,
                                   int mode)
                            throws tcl.lang.TclException

Throws:

tcl.lang.TclException

extractNoePeaksSlow

public static void extractNoePeaksSlow(tcl.lang.Interp interp,
                                       starfish.datasets.peaks.PeakList peakList,
                                       int mode)
                                throws tcl.lang.TclException

Throws:

tcl.lang.TclException

extractNoePeaks2

public static void extractNoePeaks2(tcl.lang.Interp interp,
                                    starfish.datasets.peaks.PeakList peakList,
                                    int maxAmbig,
                                    boolean getInfo)
                             throws tcl.lang.TclException

Throws:

tcl.lang.TclException