starfish.chemistry
Class IdPeakCmd

java.lang.Object
  starfish.chemistry.IdPeakCmd

All Implemented Interfaces:

tcl.lang.Command

public class IdPeakCmd
extends java.lang.Object
implements tcl.lang.Command

Constructor Summary

IdPeakCmd()

Method Summary

void	cmdProc(tcl.lang.Interp interp, tcl.lang.TclObject[] argv)
void	cmdProc2(tcl.lang.Interp interp, tcl.lang.TclObject[] argv)
java.util.ArrayList<starfish.chemistry.IdResult>	getResults(java.util.Vector[] matchList, MatchCriteria[] matchCriteria)
java.util.ArrayList<starfish.chemistry.IdResult>	getResults2(java.util.Vector[] matchList, MatchCriteria[] matchCriteria)
boolean	matchName(java.lang.String aName, java.lang.String[] patterns)
java.util.Vector[]	scan(MatchCriteria[] matchCriteria)
java.util.Vector[]	scan3(MatchCriteria[] matchCriteria)
MatchCriteria[]	setup(tcl.lang.Interp interp, Molecule molecule, tcl.lang.TclObject[] argv)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IdPeakCmd

public IdPeakCmd()

Method Detail

cmdProc

public void cmdProc(tcl.lang.Interp interp,
                    tcl.lang.TclObject[] argv)
             throws tcl.lang.TclException

Specified by:

cmdProc in interface tcl.lang.Command

Throws:

tcl.lang.TclException

cmdProc2

public void cmdProc2(tcl.lang.Interp interp,
                     tcl.lang.TclObject[] argv)
              throws tcl.lang.TclException

Throws:

tcl.lang.TclException

setup

public MatchCriteria[] setup(tcl.lang.Interp interp,
                             Molecule molecule,
                             tcl.lang.TclObject[] argv)
                      throws tcl.lang.TclException

Throws:

tcl.lang.TclException

scan

public java.util.Vector[] scan(MatchCriteria[] matchCriteria)

scan3

public java.util.Vector[] scan3(MatchCriteria[] matchCriteria)

matchName

public boolean matchName(java.lang.String aName,
                         java.lang.String[] patterns)

getResults

public java.util.ArrayList<starfish.chemistry.IdResult> getResults(java.util.Vector[] matchList,
                                                                   MatchCriteria[] matchCriteria)
                                                            throws tcl.lang.TclException

Throws:

tcl.lang.TclException

getResults2

public java.util.ArrayList<starfish.chemistry.IdResult> getResults2(java.util.Vector[] matchList,
                                                                    MatchCriteria[] matchCriteria)
                                                             throws tcl.lang.TclException

Throws:

tcl.lang.TclException