nv_mol

The create command creates a molecular structure and sends it to the Molecular Data Viewer with the name "molName". The atoms in the current NMRView structure that are used for display are those previously set for display with the "display" command. The bond connectivity between the atoms depends on the -option parameter.

nv_mol molecule molName

Create a molecular structure for display and send it to the Molecular Data Viewer. Atom connectivity in the display will be according to the covalent bond connectivity of the current NMRView structure.

nv_mol chain molName

Create a molecular structure for display and send it to the Molecular Data Viewer. Bonds will be drawn between sequentially adjacent atoms (that are set for display) in the current NMRView structure. For example, if only CA atoms are set for display, the bonds will be drawn from one CA atom to the next, resulting in a CA backbone trace.